IQRmodel

IQRmodel.Rd

IQRmodel

IQRmodel(input = NULL, FLAGsim = TRUE, FLAGsym = FALSE, sensParams = NULL)

Arguments

input

A character string with the path/filename.txt to an IQRmodel text representation

FLAGsim

TRUE: the IQRmodel is prepared for simulation. This means that mathematics for dosing inputs are handled and all required simulation related functions will be generated.

FLAGsym

If set to FALSE then no symbolic information will be generated for a model. If set to TRUE (default) then state jacobian, state/parameter, output/state and output/parameter derivatives will attempted to be generated symbolically and attached to the model if successful.

sensParams

Vector with parameter names for which sensitivities can be calculated for all state variables. This input argument is added here but it can also be changed afterwards in other functions that need the sensitivities.

Value

An IQRmodel object. If input is NULL, an empty object is returned.

See also

Other IQRmodel: addOutputs_IQRmodel(), addRelations_IQRmodel(), createSimIQRmodelSpec(), exportSBML_IQRmodel(), exportVariant_IQRmodel(), export_IQRmodel(), getPars_IQRmodel(), hasCcodeFunctions_IQRmodel(), hasInitialAssignments_IQRmodel(), importSBML_IQRmodel(), importVariant_IQRmodel(), is_IQRmodel(), new_IQRmodel(), print.IQRmodel(), print.IQRsensitivity(), regenerate_IQRmodel(), replaceTerms_IQRmodel(), sensitivity_IQRmodel(), setParameters_IQRmodel(), setPars_IQRmodel(), sim_IQRmodel(), sim_IQRmodel_strict(), simbio_CSV2namedVector(), simbio_updateParamIC_IQRmodel(), stoichiometry_IQRmodel(), strReplace_IQRmodel()

Other Allowed in IQRmodel: and(), ge(), gt(), interp0(), interp1(), interpcs(), le(), lt(), mod(), or(), piecewise()