Add new relations to an IQR model
addRelations_IQRmodel.RdAdds new parameter and variable relations to the model.
addRelations_IQRmodel(
model,
variables,
notes = NULL,
regenerateModel = TRUE,
verbose = TRUE
)Arguments
- model
IQR model
- variables
named character vector, e.g.
c(kD_2 = "kD*f_kD").- notes
named character vector, e.g.
c(kD_2 = "Second binding affinity").- regenerateModel
logical (default is FALSE). Re-compile the model if TRUE.
- verbose
logical (default is TRUE). Show verbose information documenting what is happening.
Value
IQRmodel object.
Details
The function adds the new definitions in the beginning of the variable sections. If by the replacement parameters become obsolete, they will be removed from the model. Newly introduced symbols will be interpreted as parameters and will be added to the model as such with a value of 0.
Multiple relations can be introduced at the same time. However, the new relations need to be self-contained, not using variables defined in the original model.
See also
Other IQRmodel:
IQRmodel(),
addOutputs_IQRmodel(),
createSimIQRmodelSpec(),
exportSBML_IQRmodel(),
exportVariant_IQRmodel(),
export_IQRmodel(),
getPars_IQRmodel(),
hasCcodeFunctions_IQRmodel(),
hasInitialAssignments_IQRmodel(),
importSBML_IQRmodel(),
importVariant_IQRmodel(),
is_IQRmodel(),
new_IQRmodel(),
print.IQRmodel(),
print.IQRsensitivity(),
regenerate_IQRmodel(),
replaceTerms_IQRmodel(),
sensitivity_IQRmodel(),
setParameters_IQRmodel(),
setPars_IQRmodel(),
sim_IQRmodel(),
sim_IQRmodel_strict(),
simbio_CSV2namedVector(),
simbio_updateParamIC_IQRmodel(),
stoichiometry_IQRmodel(),
strReplace_IQRmodel()
Other QSP:
IQRsysEst(),
IQRsysModel(),
IQRsysProject(),
addOutputs_IQRmodel(),
as_IQRsysEst(),
as_IQRsysProject(),
as_IQRsysProjectMulti(),
comparePars_IQRsysModel(),
duplicate_IQRsysProject(),
exportVariant_IQRmodel(),
exportVirtualSubjects_IQRnlmeProject(),
export_IQRsysData(),
getDosing_IQRsysModel(),
getEmpiricalETACovarianceMatrix_IQRsysProject(),
getOptTrace_IQRsysProject(),
getPars_IQRoptTrace(),
getPars_IQRsysModel(),
getPrediction_IQRsysModel(),
hasrun_IQRsysProject(),
importVariant_IQRmodel(),
import_IQRsysData(),
is_IQRsysEst(),
is_IQRsysModel(),
is_IQRsysProject(),
is_IQRsysProjectMulti(),
load_IQRsysProject(),
modelSpec_IQRsysEst(),
model_IQRsysModel(),
offsetTIME_IQRsysData(),
plotDVPRED_IQRsysModel(),
plotFit_IQRsysModel(),
plotPars_IQRsysModel(),
plotPred_IQRsysModel(),
plotProfile_IQRsysModel(),
plotWRES_IQRsysModel(),
plotWaterfall_IQRsysModel(),
plot_IQRoptTrace(),
plot_IQRsysModel(),
print.IQRsensitivity(),
print.IQRsysProject(),
profile_IQRsysModel(),
replaceTerms_IQRmodel(),
run_IQRsysProject(),
run_IQRsysProjectMulti(),
sample_IQRsysModel(),
sensitivity_IQRmodel(),
setPars_IQRsysModel(),
sim_IQRsysModel(),
sim_IQRvirtualSubjects(),
simbio_CSV2namedVector(),
simbio_updateParamIC_IQRmodel(),
spmIIV_IQRsysProject(),
spm_IQRsysProject(),
switchOpt_IQRsysModel(),
tablePars_IQRsysModel()