Replace terms in ODEs of IQR model
replaceTerms_IQRmodel.RdReplacement of character expressions or regular expressions in the ODEs defined in an IQR model.
replaceTerms_IQRmodel(
model,
terms,
regenerateModel = FALSE,
fixed = TRUE,
verbose = TRUE
)Arguments
- model
IQR model
- terms
named character vector, e.g.
c("kD_2*Conc_Blood" = "kD_2_Blood*Conc_Blood").- regenerateModel
logical (default is FALSE). Re-compile the model if TRUE.
- fixed
logical (defaul is TRUE). Search for expression as it is if TRUE, interpret as regular expression if FALSE. See gsub for more details about the
fixedoption.- verbose
logical (default is TRUE). Show verbose information documenting what is happening.
Value
IQRmodel object.
Details
The function replaces expressions by new expressions. If by this procedure new symbols are introduced to the model, they are interpreted as parameters and are added to the list of known parameters being initialized with 0.
See also
Other IQRmodel:
IQRmodel(),
addOutputs_IQRmodel(),
addRelations_IQRmodel(),
createSimIQRmodelSpec(),
exportSBML_IQRmodel(),
exportVariant_IQRmodel(),
export_IQRmodel(),
getPars_IQRmodel(),
hasCcodeFunctions_IQRmodel(),
hasInitialAssignments_IQRmodel(),
importSBML_IQRmodel(),
importVariant_IQRmodel(),
is_IQRmodel(),
new_IQRmodel(),
print.IQRmodel(),
print.IQRsensitivity(),
regenerate_IQRmodel(),
sensitivity_IQRmodel(),
setParameters_IQRmodel(),
setPars_IQRmodel(),
sim_IQRmodel(),
sim_IQRmodel_strict(),
simbio_CSV2namedVector(),
simbio_updateParamIC_IQRmodel(),
stoichiometry_IQRmodel(),
strReplace_IQRmodel()
Other QSP:
IQRsysEst(),
IQRsysModel(),
IQRsysProject(),
addOutputs_IQRmodel(),
addRelations_IQRmodel(),
as_IQRsysEst(),
as_IQRsysProject(),
as_IQRsysProjectMulti(),
comparePars_IQRsysModel(),
duplicate_IQRsysProject(),
exportVariant_IQRmodel(),
exportVirtualSubjects_IQRnlmeProject(),
export_IQRsysData(),
getDosing_IQRsysModel(),
getEmpiricalETACovarianceMatrix_IQRsysProject(),
getOptTrace_IQRsysProject(),
getPars_IQRoptTrace(),
getPars_IQRsysModel(),
getPrediction_IQRsysModel(),
hasrun_IQRsysProject(),
importVariant_IQRmodel(),
import_IQRsysData(),
is_IQRsysEst(),
is_IQRsysModel(),
is_IQRsysProject(),
is_IQRsysProjectMulti(),
load_IQRsysProject(),
modelSpec_IQRsysEst(),
model_IQRsysModel(),
offsetTIME_IQRsysData(),
plotDVPRED_IQRsysModel(),
plotFit_IQRsysModel(),
plotPars_IQRsysModel(),
plotPred_IQRsysModel(),
plotProfile_IQRsysModel(),
plotWRES_IQRsysModel(),
plotWaterfall_IQRsysModel(),
plot_IQRoptTrace(),
plot_IQRsysModel(),
print.IQRsensitivity(),
print.IQRsysProject(),
profile_IQRsysModel(),
run_IQRsysProject(),
run_IQRsysProjectMulti(),
sample_IQRsysModel(),
sensitivity_IQRmodel(),
setPars_IQRsysModel(),
sim_IQRsysModel(),
sim_IQRvirtualSubjects(),
simbio_CSV2namedVector(),
simbio_updateParamIC_IQRmodel(),
spmIIV_IQRsysProject(),
spm_IQRsysProject(),
switchOpt_IQRsysModel(),
tablePars_IQRsysModel()