1. Raue, Bioinformatics 31(21), 2015↩︎

  2. Kaschek, dMod, 2016 (https://cran.r-project.org/package=dMod)↩︎

Generic print function for IQRdataGENERAL objects

Generic print function for IQRdataGENERAL objects

# S3 method for IQRdataGENERAL
plot(
  x,
  pathname = "DataExploration",
  stratify = NULL,
  scaleOBS = "log",
  scaleCOV = "linear",
  covNames = NULL,
  catNames = NULL,
  ...
)

Arguments

x

IQRdataGENERAL object

pathname

Folder (path from the current working directory, defaults to 'DataExploration') in which graphs and tables are printed. If NULL graphs are shown in figure windows and tables on the command line.

stratify

Names of covariate columns to be used for stratification. For continuous covariates, observations stratified to below and above median. Defaults to no stratification (NULL).

scaleOBS

Defines whether to plot observations on linear or logarithmic scales: Either "log", "linear" or named (observation names) vector of "log" and "linear" entries for scaling observations differently. Defaults to logarithmic scale.

scaleCOV

Defines whether to plot continuous covariates on linear or logarithmic scales: Either "log", "linear" or named (covariate column names) vector of "log" and "linear" entries for scaling covariates differently. Defaults to linear scale.

covNames

Character vector with continuous covariates to include in graphical analysis. Defaults to all (NULL).

catNames

Character vector with categorical covariates to include in graphical analysis. Defaults to all (NULL).

...

additional input params (unused)

See also

Other IQRdataGeneral: +.IQRdataGENERAL(), IQRcalcTAD(), IQRdataGENERAL(), IQRexpandADDLII(), IQRloadCSVdata(), IQRsaveCSVdata(), addIndivRegressors_IQRdataGENERAL(), addLabel_IQRdataGENERAL(), attributes0(), blloqInfo_IQRdataGENERAL(), blloq_IQRdataGENERAL(), check_IQRdataGENERAL(), clean_IQRdataGENERAL(), combine_IQRdataGENERAL(), convertCat2Text(), covImpute_IQRdataGENERAL(), date2dateday_IQRdataProgramming(), date2datetime_IQRdataProgramming(), date2time_IQRdataProgramming(), exportDEFINE_IQRaedataER(), exportDEFINE_IQRdataGENERAL(), exportDEFINEpdf_IQRdataGENERAL(), exportSYS_IQRdataGENERAL(), export_IQRdataGENERAL(), getLabels_dataframe(), getNAcolNLME_IQRdataGENERAL(), handleSameTimeObs_IQRdataGENERAL(), is_IQRdataGENERAL(), loadATRinfo_csvData(), loadAttributeFile(), load_IQRdataGENERAL(), mapCategoricalCovariate_IQRnlmeProject(), mapCategoricalCovariate_csvData(), mapContinuousCovariate_IQRnlmeProject(), mapContinuousCovariate_csvData(), mutateCov_IQRdataGENERAL(), obfuscate_IQRdataGENERAL(), plotCorCat_IQRdataGENERAL(), plotCorCovCat_IQRdataGENERAL(), plotCorCov_IQRdataGENERAL(), plotCovDistribution_IQRdataGENERAL(), plotDoseSchedule_IQRdataGENERAL(), plotIndiv_IQRdataGENERAL(), plotRange_IQRdataGENERAL(), plotSampleSchedule_IQRdataGENERAL(), plotSpaghetti_IQRdataGENERAL(), print.IQRdataGENERAL(), removeCommata_dataframe(), rmAMT0_IQRdataGENERAL(), rmDosePostLastObs_IQRdataGENERAL(), rmIGNOREd_IQRdataGENERAL(), rmMissingTIMEobsRecords_IQRdataGENERAL(), rmNOobsSUB_IQRdataGENERAL(), rmNonTask_IQRdataGENERAL(), rmPLACEBO_IQRdataGENERAL(), rmSubjects_IQRdataGENERAL(), setIGNORErecords_IQRdataGENERAL(), setMissingDVobsRecordsIGNORE_IQRdataGENERAL(), subset.IQRdataGENERAL(), summary.IQRdataGENERAL(), summaryCat_IQRdataGENERAL(), summaryCov_IQRdataGENERAL(), summaryObservations_IQRdataGENERAL(), transformObs_IQRdataGENERAL(), unlabel_dataframe()

Other IQRdataGeneral: +.IQRdataGENERAL(), IQRcalcTAD(), IQRdataGENERAL(), IQRexpandADDLII(), IQRloadCSVdata(), IQRsaveCSVdata(), addIndivRegressors_IQRdataGENERAL(), addLabel_IQRdataGENERAL(), attributes0(), blloqInfo_IQRdataGENERAL(), blloq_IQRdataGENERAL(), check_IQRdataGENERAL(), clean_IQRdataGENERAL(), combine_IQRdataGENERAL(), convertCat2Text(), covImpute_IQRdataGENERAL(), date2dateday_IQRdataProgramming(), date2datetime_IQRdataProgramming(), date2time_IQRdataProgramming(), exportDEFINE_IQRaedataER(), exportDEFINE_IQRdataGENERAL(), exportDEFINEpdf_IQRdataGENERAL(), exportSYS_IQRdataGENERAL(), export_IQRdataGENERAL(), getLabels_dataframe(), getNAcolNLME_IQRdataGENERAL(), handleSameTimeObs_IQRdataGENERAL(), is_IQRdataGENERAL(), loadATRinfo_csvData(), loadAttributeFile(), load_IQRdataGENERAL(), mapCategoricalCovariate_IQRnlmeProject(), mapCategoricalCovariate_csvData(), mapContinuousCovariate_IQRnlmeProject(), mapContinuousCovariate_csvData(), mutateCov_IQRdataGENERAL(), obfuscate_IQRdataGENERAL(), plotCorCat_IQRdataGENERAL(), plotCorCovCat_IQRdataGENERAL(), plotCorCov_IQRdataGENERAL(), plotCovDistribution_IQRdataGENERAL(), plotDoseSchedule_IQRdataGENERAL(), plotIndiv_IQRdataGENERAL(), plotRange_IQRdataGENERAL(), plotSampleSchedule_IQRdataGENERAL(), plotSpaghetti_IQRdataGENERAL(), print.IQRdataGENERAL(), removeCommata_dataframe(), rmAMT0_IQRdataGENERAL(), rmDosePostLastObs_IQRdataGENERAL(), rmIGNOREd_IQRdataGENERAL(), rmMissingTIMEobsRecords_IQRdataGENERAL(), rmNOobsSUB_IQRdataGENERAL(), rmNonTask_IQRdataGENERAL(), rmPLACEBO_IQRdataGENERAL(), rmSubjects_IQRdataGENERAL(), setIGNORErecords_IQRdataGENERAL(), setMissingDVobsRecordsIGNORE_IQRdataGENERAL(), subset.IQRdataGENERAL(), summary.IQRdataGENERAL(), summaryCat_IQRdataGENERAL(), summaryCov_IQRdataGENERAL(), summaryObservations_IQRdataGENERAL(), transformObs_IQRdataGENERAL(), unlabel_dataframe()