1. Raue, Bioinformatics 31(21), 2015↩︎

  2. Kaschek, dMod, 2016 (https://cran.r-project.org/package=dMod)↩︎

Extract Vector of Parameter Values from Optimization Trace Data

Extracts the parameter values for a certain fit (by index) and iteration from the optimization traces as being returned from getOptTrace_IQRsysProject. Values are returned on their natural scale and can directly be used in sim_IQRsysModel as parameters argument.

getPars_IQRoptTrace(
  trace,
  index = trace$Index[1],
  iteration = max(trace$Iteration[trace$Index == index])
)

Arguments

trace

Data frame with required columns

index

Index of the fit

iteration

Which iteration

Value

Named numeric vector

Author

Daniel Kaschek, IntiQuan