Raue, Bioinformatics 31(21), 2015↩︎
Kaschek, dMod, 2016 (https://cran.r-project.org/package=dMod)↩︎
Runs an IQRsysProjectMulti object (each IQRsysProject within)
run_IQRsysProjectMulti.RdWith "running" is meant that it will run the parameter estimation for IQRsysProjects.
run_IQRsysProjectMulti(
projectPath,
ncores = 1,
Nparallel = 1,
FLAGgof = TRUE,
FLAGgofStratify = FALSE,
FLAGrequireConverged = FALSE
)Arguments
- projectPath
An IQRsysProjectMulti object
- ncores
Number of cores if use of parallelization of a single model run - for sysmodels this applies to multi-start runs.
- Nparallel
Number of models to run in parallel
- FLAGgof
TRUE: Create GoF plots for all runs FALSE: Do not create GoF plots. NOTE THAT GoF plots are out of scope of WP3.
- FLAGgofStratify
TRUE: additional GoF plots stratified by covariates in the dataset are produced. For continuous covariates 2 groups are selected (smaller than median and greater equal median). FALSE: no stratification is done (faster).
- FLAGrequireConverged
(Default: TRUE) Require convergence of the best fit to continue. If best fit is not converged, the project is saved directly after fitting and no plots are produced.
Value
An IQRsysProjectMulti is returned.
See also
Other QSP:
IQRsysEst(),
IQRsysModel(),
IQRsysProject(),
addOutputs_IQRmodel(),
addRelations_IQRmodel(),
as_IQRsysEst(),
as_IQRsysProjectMulti(),
as_IQRsysProject(),
comparePars_IQRsysModel(),
duplicate_IQRsysProject(),
exportVariant_IQRmodel(),
exportVirtualSubjects_IQRnlmeProject(),
export_IQRsysData(),
getDosing_IQRsysModel(),
getEmpiricalETACovarianceMatrix_IQRsysProject(),
getOptTrace_IQRsysProject(),
getPars_IQRoptTrace(),
getPars_IQRsysModel(),
getPrediction_IQRsysModel(),
hasrun_IQRsysProject(),
importVariant_IQRmodel(),
import_IQRsysData(),
is_IQRsysEst(),
is_IQRsysModel(),
is_IQRsysProjectMulti(),
is_IQRsysProject(),
load_IQRsysProject(),
modelSpec_IQRsysEst(),
model_IQRsysModel(),
offsetTIME_IQRsysData(),
plotDVPRED_IQRsysModel(),
plotFit_IQRsysModel(),
plotPars_IQRsysModel(),
plotPred_IQRsysModel(),
plotProfile_IQRsysModel(),
plotWRES_IQRsysModel(),
plotWaterfall_IQRsysModel(),
plot_IQRoptTrace(),
plot_IQRsysModel(),
print.IQRsensitivity(),
print.IQRsysProject(),
profile_IQRsysModel(),
replaceTerms_IQRmodel(),
run_IQRsysProject(),
sample_IQRsysModel(),
sensitivity_IQRmodel(),
setPars_IQRsysModel(),
sim_IQRsysModel(),
sim_IQRvirtualSubjects(),
simbio_CSV2namedVector(),
simbio_updateParamIC_IQRmodel(),
spmIIV_IQRsysProject(),
spm_IQRsysProject(),
switchOpt_IQRsysModel(),
tablePars_IQRsysModel()